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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159738523_159744055_F

Intron Information:

Intron Rank:
138172
Intron Class:
major
Intron Phase:
Intron Coordinates:
159738523 - 159744055
Intron Length:
5533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TCTCTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.3
0.75
0.8
80.3
30.3
Minor 5ss
33.9
-1.8
3.3
47.6
48
Minor BPS
72.5
0.7
1.2
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024307
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037316
159734382 - 159744233
9852