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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159739802_159744055_F

Intron Information:

Intron Rank:
138166
Intron Class:
major
Intron Phase:
Intron Coordinates:
159739802 - 159744055
Intron Length:
4254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAACTTC
5'SS Class:
major
3'SS Sequence:
TCTCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TCTCTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
68.2
37.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.3
0.75
0.8
80.3
30.3
Minor 5ss
47.9
-0.2
2.9
64.2
42.8
Minor BPS
72.5
0.7
1.2
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024307
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018653
159734382 - 159744233
9852