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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159776093_159776302_F

Intron Information:

Intron Rank:
141280
Intron Class:
major
Intron Phase:
Intron Coordinates:
159776093 - 159776302
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGCC
5'SS Class:
major
3'SS Sequence:
TCCTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCCTCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
66.7
40.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.3
0.77
0.7
76.2
32.4
Minor 5ss
33
-1.9
3.3
45.2
42.7
Minor BPS
68.5
0.66
1.6
79.57
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022804
159775655 - 159781599
5945