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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159776671_159781554_F

Intron Information:

Intron Rank:
141282
Intron Class:
major
Intron Phase:
Intron Coordinates:
159776671 - 159781554
Intron Length:
4884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTACCTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82.9
0.74
0.7
81.3
29.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
57.2
0.3
1.7
75.64
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022804
159775655 - 159781599
5945