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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159809444_159809793_F

Intron Information:

Intron Rank:
140508
Intron Class:
major
Intron Phase:
Intron Coordinates:
159809444 - 159809793
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GATCTTTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AAACATATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
74.5
0.55
1
69.1
41.5
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
45
-0.4
1.6
50.74
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025627
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034901
159794640 - 159810974
16335