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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15992019_15992903_F

Intron Information:

Intron Rank:
132836
Intron Class:
major
Intron Phase:
Intron Coordinates:
15992019 - 15992903
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATGAGCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.1
0.65
0.8
73.4
36.2
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
60.1
0.4
1.8
74.92
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021450
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028029
15991881 - 15993352
1472
ENSAPLT00000017196
15991881 - 15994702
2822