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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159967056_160070511_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159967056 - 160070511
Intron Length:
103456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
GTTTCCCCATGT
Flanking Amino Acid:
PIIYILMNKQECGHRKTRNV
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
86.6
0.82
0.8
81.4
30.6
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
44.7
-0.3
2.3
70
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041641
159963440 - 160125808
162369