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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_159976865_160025735_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
159976865 - 160025735
Intron Length:
48871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TCCTGATTAATA
Flanking Amino Acid:
GGPKLVMCNKVSFSFTNTSR
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
82.3
0.73
0.9
73.9
41.1
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
51.1
0.03
2
63.77
43.2

Associated Gene:

Gene:
ST6GAL2
Ensembl Gene ID:
ENSAPLG00000008393
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008719
159967587 - 160048540
80954