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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160070746_160103160_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
160070746 - 160103160
Intron Length:
32415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCATCTTTCACT
Flanking Amino Acid:
YGRLLYAVKQVGKIHKNTAR
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
69.3
0.43
0.9
63.2
37.9
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
66.4
0.6
1.7
80.24
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021551
160045854 - 160131522
85669
ENSAPLT00000008594
160005788 - 160125808
120021
ENSAPLT00000041641
159963440 - 160125808
162369
ENSAPLT00000023627
160045854 - 160161529
115676