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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160103487_160125471_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
160103487 - 160125471
Intron Length:
21985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAACATTTAAAT
Flanking Amino Acid:
RWYGFVNSCFGIVSLISLAV
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.9
0.61
0.9
70.5
39.9
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
50.5
0.09
1.6
64.93
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021551
160045854 - 160131522
85669
ENSAPLT00000008594
160005788 - 160125808
120021
ENSAPLT00000041641
159963440 - 160125808
162369
ENSAPLT00000023627
160045854 - 160161529
115676