Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160219525_160227106_R

Intron Information:

Intron Rank:

151269

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

160219525 - 160227106

Intron Length:

7582

Sequence Information:

Terminal Dinucleotides:

GT-TT

5'SS Sequence:

CTT|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

TTTTTATTTTATT|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTTTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

75.4

33.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

27.6

-1.3

4.3

72.4

41.8

Minor 5ss

38.6

-1.3

2.7

49.8

40.3

Minor BPS

63.1

0.49

1.8

84.66

35.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028913

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043444

160210700 - 160227188

16489