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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160254713_160256754_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
160254713 - 160256754
Intron Length:
2042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATTCCTTTATT
Flanking Amino Acid:
DQKVESKIEEAVAPLREKIR
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.7
0.74
0.7
81.1
29.7
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
76.3
0.91
1.5
89.12
35.3

Associated Gene:

Gene:
UXS1
Ensembl Gene ID:
ENSAPLG00000013373
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036907
160240305 - 160296877
56573
ENSAPLT00000013957
160243492 - 160296238
52747