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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160273007_160274782_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
160273007 - 160274782
Intron Length:
1776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
TCTTCCTCCATA
Flanking Amino Acid:
LLASTSEVYGDPEVHPQNED
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
77.4
0.62
0.7
72.8
25.5
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
56.7
0.2
2
71.19
41.6

Associated Gene:

Gene:
UXS1
Ensembl Gene ID:
ENSAPLG00000013373
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036907
160240305 - 160296877
56573
ENSAPLT00000013957
160243492 - 160296238
52747