Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160274905_160284406_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

160274905 - 160284406

Intron Length:

9502

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTAAAT

5'SS Class:

major

3'SS Sequence:

TCTTTGCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTAAA

U12 Branch Point Sequence:

AGGTAGTTAAAT

Flanking Amino Acid:

ETMCYAYMKQEGVEVRVARI

Intron Amino Acid Position:

210

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

75.3

33.9

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

78.5

0.64

0.8

72.5

32.4

Minor 5ss

41.3

-1

2.9

57.7

46.5

Minor BPS

46.8

-0.1

2.3

65.68

44.2

Associated Gene:

Gene:

UXS1

Ensembl Gene ID:

ENSAPLG00000013373

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036907

160240305 - 160296877

56573

ENSAPLT00000013957

160243492 - 160296238

52747