Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160284527_160289159_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

160284527 - 160289159

Intron Length:

4633

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTAAT

5'SS Class:

major

3'SS Sequence:

CATCTGGCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ACTTCTGTAACT

Flanking Amino Acid:

LQALQGEALTVYGPGTQTRA

Intron Amino Acid Position:

250

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

81.1

32.8

Major BPS

100

1.24

0.5

100

Major PPT

0.36

0.9

62.1

39.5

Minor 5ss

39.6

-1.2

2.9

41.2

Minor BPS

64.1

0.52

81.74

40.3

Associated Gene:

Gene:

UXS1

Ensembl Gene ID:

ENSAPLG00000013373

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013957

160243492 - 160296238

52747

ENSAPLT00000036907

160240305 - 160296877

56573