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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160301992_160303932_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
160301992 - 160303932
Intron Length:
1941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCTTTATTA
Flanking Amino Acid:
QFLYLGFDEAKFEDDMSYWT
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.5
0.69
1
77.8
36
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
69.2
0.6
1.5
77.34
33.8

Associated Gene:

Gene:
ECRG4
Ensembl Gene ID:
ENSAPLG00000013483
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014043
160301830 - 160330557
28728