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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160304091_160305042_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
160304091 - 160305042
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
GAATTAATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GGGGAATTAATT
Flanking Amino Acid:
KLKLMLQKREAPAAAKPEVS
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.2
0.39
1.1
56.3
47.3
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
46.5
-0.1
1.9
59.75
43.4

Associated Gene:

Gene:
ECRG4
Ensembl Gene ID:
ENSAPLG00000013483
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014043
160301830 - 160330557
28728