Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160388748_160411512_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

160388748 - 160411512

Intron Length:

22765

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TATTTTGTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

GTTACATTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

22.3

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

85.8

0.81

0.9

80.9

36.4

Minor 5ss

28.9

-2.4

3.2

39.6

46.4

Minor BPS

53.7

0.19

1.9

75.03

41.5

Associated Gene:

Gene:

NCK2

Ensembl Gene ID:

ENSAPLG00000013494

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020558

160360674 - 160411584

50911

ENSAPLT00000014061

160360215 - 160411584

51370