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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160429362_160431199_R

Intron Information:

Intron Rank:
144774
Intron Class:
major
Intron Phase:
Intron Coordinates:
160429362 - 160431199
Intron Length:
1838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAG
U12 Branch Point Sequence:
CAGCCCACACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.1
30.9
Major BPS
51.1
0.03
1.8
71.4
45.1
Major PPT
76.8
0.6
0.8
68.7
37.2
Minor 5ss
30.6
-2.2
3
41.1
45.5
Minor BPS
42
-0.5
2
55.99
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025259
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038794
160428545 - 160433382
4838