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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160574739_160575740_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
160574739 - 160575740
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGCTC
5'SS Class:
major
3'SS Sequence:
TTCCCATAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTGTCTTACTT
Flanking Amino Acid:
FAMQCVQCKKAITSGGVTYR
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
60.6
44.2
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
67.1
0.38
1
62.7
36.5
Minor 5ss
34
-1.8
3.7
50.1
46.5
Minor BPS
64.8
0.54
1.7
82.74
39.5

Associated Gene:

Gene:
FHL2
Ensembl Gene ID:
ENSAPLG00000013513
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034232
160539515 - 160577612
38098
ENSAPLT00000017820
160539515 - 160577612
38098
ENSAPLT00000014086
160553591 - 160577612
24022