Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160575928_160577428_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

160575928 - 160577428

Intron Length:

1501

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAGGTCCC

5'SS Class:

major

3'SS Sequence:

GGTTTCCAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAA

U12 Branch Point Sequence:

TCCCCTGTAACA

Flanking Amino Acid:

KCAGCTNPISGLGGTKYISF

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

62.9

39.7

Major BPS

68.1

0.45

1.3

78.7

34.9

Major PPT

65.1

0.34

59.5

40.9

Minor 5ss

34.2

-1.8

3.1

38.9

Minor BPS

51.6

0.05

63.93

Associated Gene:

Gene:

FHL2

Ensembl Gene ID:

ENSAPLG00000013513

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034232

160539515 - 160577612

38098

ENSAPLT00000017820

160539515 - 160577612

38098

ENSAPLT00000014086

160553591 - 160577612

24022