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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160593172_160595114_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
160593172 - 160595114
Intron Length:
1943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGACGGGA
5'SS Class:
weak_major
3'SS Sequence:
AAGACACAATGAG|T
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TCTTCCTTACTC
Flanking Amino Acid:
RLQRPPARPVTVKAFKLVSA
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.4
51
42.1
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
40.3
-0.5
1.6
35
39.5
Minor 5ss
30.1
-2.3
3.5
35.9
41.9
Minor BPS
71.7
0.66
1.6
77.77
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012232
160593062 - 160615083
22022