About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160601037_160602036_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
160601037 - 160602036
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCCAA
5'SS Class:
major
3'SS Sequence:
TTGCTCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AGATTATAAACT
Flanking Amino Acid:
KEGHILQDFEGKVIVATSKC
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
59.6
40.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
76.7
0.6
1
69.3
41.7
Minor 5ss
43.3
-0.7
2.8
56.2
48
Minor BPS
49.7
0.06
1.9
69.06
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012232
160593062 - 160615083
22022