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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160602192_160608496_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
160602192 - 160608496
Intron Length:
6305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTCCT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTCTCTTTCATA
Flanking Amino Acid:
RRNIPKEKFQVMYKRILQQA
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
68
42.9
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
83
0.74
0.7
79.6
26
Minor 5ss
38.4
-1.3
2.8
51.7
44.7
Minor BPS
64.2
0.44
1.7
74.34
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012232
160593062 - 160615083
22022