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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160652108_160653268_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
160652108 - 160653268
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
VLHYFPVLQDREQLLFPFQF
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
MRPS9
Ensembl Gene ID:
ENSAPLG00000013899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043163
160650411 - 160681782
31372
ENSAPLT00000014505
160650411 - 160681782
31372