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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160668867_160676633_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
160668867 - 160676633
Intron Length:
7767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTTTATTTATTT
Flanking Amino Acid:
PETFTQEDIDHPTEIFPEQR
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87
0.83
0.8
81.7
34.5
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
58.5
0.34
1.8
77.47
39.3

Associated Gene:

Gene:
MRPS9
Ensembl Gene ID:
ENSAPLG00000013899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043163
160650411 - 160681782
31372