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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160676814_160680722_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
160676814 - 160680722
Intron Length:
3909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
AATCTCTCATTT
Flanking Amino Acid:
VAAAGGPGSQTLRLIYTTTA
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79
0.65
0.9
81.2
36.5
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
48
-0
1.7
65.17
39.3

Associated Gene:

Gene:
MRPS9
Ensembl Gene ID:
ENSAPLG00000013899
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043163
160650411 - 160681782
31372
ENSAPLT00000014505
160650411 - 160681782
31372