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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160770179_160786340_F

Intron Information:

Intron Rank:
147774
Intron Class:
major
Intron Phase:
Intron Coordinates:
160770179 - 160786340
Intron Length:
16162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGCAG
5'SS Class:
major
3'SS Sequence:
CATTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGAACTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
56.9
43.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
87.2
0.84
0.7
84.9
29.5
Minor 5ss
25.1
-2.9
3.1
30.2
42.9
Minor BPS
70.2
0.71
1.2
78.45
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029521
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028625
160769702 - 160787605
17904