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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_160986880_160987206_R

Intron Information:

Intron Rank:
149785
Intron Class:
major
Intron Phase:
Intron Coordinates:
160986880 - 160987206
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTTTCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
80.4
0.68
0.8
72.8
37.1
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
74.6
0.85
1.6
87.57
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028143
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025415
160956821 - 160987294
30474