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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161224690_161225687_R

Intron Information:

Intron Rank:
150997
Intron Class:
major
Intron Phase:
Intron Coordinates:
161224690 - 161225687
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGCTTTTTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.5
0.8
0.7
81.8
28.5
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
50.8
-0.1
1.6
54.7
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028739
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025523
161224658 - 161227843
3186