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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161730758_161733488_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
161730758 - 161733488
Intron Length:
2731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGGC
5'SS Class:
major
3'SS Sequence:
GCCTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
ACTTCCTAAAAC
Flanking Amino Acid:
VRCLYAVGFLDLFGVSMVVP
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63.2
41.8
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
82.8
0.74
0.8
80
32
Minor 5ss
36.8
-1.5
3.4
46.9
44
Minor BPS
61.4
0.34
1.8
69.93
41.4

Associated Gene:

Gene:
MFSD9
Ensembl Gene ID:
ENSAPLG00000005908
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006111
161730671 - 161740027
9357