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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161734975_161736273_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
161734975 - 161736273
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTTCTTTAATT
Flanking Amino Acid:
IMQLFSSTFVGCWSDIVGRR
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
72.1
0.5
1.1
74.5
34
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
84.7
1.17
0.9
92.55
29.6

Associated Gene:

Gene:
MFSD9
Ensembl Gene ID:
ENSAPLG00000005908
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006111
161730671 - 161740027
9357