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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161748354_161750131_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161748354 - 161750131
Intron Length:
1778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TTTCAATCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTCAATC
Flanking Amino Acid:
VRVRNKTSSRVGDSSDSEMD
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.4
0.5
1
67.1
38
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
61.5
0.34
1.5
69.53
36.7

Associated Gene:

Gene:
SLC9A2
Ensembl Gene ID:
ENSAPLG00000005438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005630
161747983 - 161780407
32425