About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161753546_161754184_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
161753546 - 161754184
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TATTCTGCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTATTCAATT
Flanking Amino Acid:
ISKVPSSVSLSEYHEGKIKP
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75
0.56
0.9
68.9
36.8
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
60.8
0.42
1.7
79.66
36.4

Associated Gene:

Gene:
SLC9A2
Ensembl Gene ID:
ENSAPLG00000005438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005630
161747983 - 161780407
32425