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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161754347_161755842_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
161754347 - 161755842
Intron Length:
1496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGAAATTAAGT
Flanking Amino Acid:
GHWGHNFWRDKFKQFDNKYL
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
78.3
36.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.5
0.48
0.9
64.8
35.6
Minor 5ss
38.8
-1.3
3.1
50
40.3
Minor BPS
48.3
-0
2.1
71.09
45.1

Associated Gene:

Gene:
SLC9A2
Ensembl Gene ID:
ENSAPLG00000005438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005630
161747983 - 161780407
32425