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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161755914_161757329_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
161755914 - 161757329
Intron Length:
1416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
ATTTCCCCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GTTTGTGTAATG
Flanking Amino Acid:
PAVSEEIYNRFFDHVKTGIE
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.8
41.1
Major BPS
76.8
0.67
1
66
40.9
Major PPT
78.2
0.63
0.7
75.4
29.2
Minor 5ss
46.2
-0.4
2.5
52.5
44.7
Minor BPS
46.8
-0.3
2.4
59.22
43.5

Associated Gene:

Gene:
SLC9A2
Ensembl Gene ID:
ENSAPLG00000005438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005630
161747983 - 161780407
32425