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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161759380_161760686_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161759380 - 161760686
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTTTTTCCATT
Flanking Amino Acid:
LLFCLIWRALGVFVLTQIIN
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
68.8
43.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
90.5
0.91
0.7
89
28.1
Minor 5ss
38.3
-1.3
2.8
40.5
45.5
Minor BPS
48.9
-0
1.9
71.95
39.8

Associated Gene:

Gene:
SLC9A2
Ensembl Gene ID:
ENSAPLG00000005438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005630
161747983 - 161780407
32425