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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16176462_16177716_R

Intron Information:

Intron Rank:
133507
Intron Class:
major
Intron Phase:
Intron Coordinates:
16176462 - 16177716
Intron Length:
1255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTATGTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82.9
23.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77.8
0.63
0.9
74.2
39.7
Minor 5ss
38.1
-1.3
3
49.4
41.3
Minor BPS
59.1
0.26
2.1
74.32
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019093
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028818
16176221 - 16178528
2308