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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161801186_161805154_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161801186 - 161805154
Intron Length:
3969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TCTTTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
ATTGCATGAATT
Flanking Amino Acid:
WRKARHVTFTDHPRSDSEAG
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
86
0.81
0.6
84.9
22.7
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
55.8
0.26
1.8
76.66
39.8

Associated Gene:

Gene:
SLC9A4
Ensembl Gene ID:
ENSAPLG00000005368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005535
161800998 - 161834833
33836