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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161805243_161805869_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
161805243 - 161805869
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACCTGTT
5'SS Class:
major
3'SS Sequence:
TGTCTGTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTCAA
U12 Branch Point Sequence:
CTGAGTTCAACC
Flanking Amino Acid:
KGNSLPWGRPVSTTGARYLS
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.37
1.3
67.6
43.8
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
70.7
0.47
1
64.8
40.5
Minor 5ss
43.6
-0.7
3.5
66.6
44.7
Minor BPS
45.8
-0.3
2
54.68
43.7

Associated Gene:

Gene:
SLC9A4
Ensembl Gene ID:
ENSAPLG00000005368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005535
161800998 - 161834833
33836