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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161806002_161808117_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
161806002 - 161808117
Intron Length:
2116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGTGTGAG
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
CTTTCTGTTACA
Flanking Amino Acid:
THNLYHVRQRAPSYNRHNLP
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
61
39.7
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
85.1
0.79
0.8
79.4
32.6
Minor 5ss
32.2
-2
3
30.8
43.2
Minor BPS
50.6
0.01
2.3
70.62
41.9

Associated Gene:

Gene:
SLC9A4
Ensembl Gene ID:
ENSAPLG00000005368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005535
161800998 - 161834833
33836