About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161808215_161812816_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
161808215 - 161812816
Intron Length:
4602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CCTTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTCCTTTATT
Flanking Amino Acid:
EISKSSTASLQSCRNRRVHR
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
85.7
0.8
0.8
79.8
31.1
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
74.6
0.86
1.6
87.9
37.7

Associated Gene:

Gene:
SLC9A4
Ensembl Gene ID:
ENSAPLG00000005368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005535
161800998 - 161834833
33836