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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161812979_161815774_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
161812979 - 161815774
Intron Length:
2796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCGTTTTTAACT
Flanking Amino Acid:
GHWSHYQLRDKFKKFDNKYL
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
79
35.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
45.7
-0.5
2.8
61.4
37.1
Minor BPS
75.9
0.89
1.2
82.67
39.4

Associated Gene:

Gene:
SLC9A4
Ensembl Gene ID:
ENSAPLG00000005368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005535
161800998 - 161834833
33836