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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161825085_161830971_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
161825085 - 161830971
Intron Length:
5887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
ATATCCTCATTT
Flanking Amino Acid:
ESLLNDGITVVLYNIFIAFT
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74
0.54
0.9
69.9
35.7
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
57.8
0.32
1.8
75.83
40.8

Associated Gene:

Gene:
SLC9A4
Ensembl Gene ID:
ENSAPLG00000005368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005535
161800998 - 161834833
33836