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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161837674_161838296_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161837674 - 161838296
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ACTATTGTAATT
Flanking Amino Acid:
ILERDILPGGAYTDEVVTAI
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
86
0.81
0.8
78
35.8
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
48.2
-0
2
65.7
40

Associated Gene:

Gene:
IL18RAP
Ensembl Gene ID:
ENSAPLG00000005272
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045956
161835125 - 161866209
31085
ENSAPLT00000005444
161837300 - 161870615
33316