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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161838468_161843339_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161838468 - 161843339
Intron Length:
4872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTATTTATTT
Flanking Amino Acid:
SYLVHNETTGDGKEFDAFVS
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
82.5
33.6
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
58.5
0.34
1.8
77.47
39.3

Associated Gene:

Gene:
IL18RAP
Ensembl Gene ID:
ENSAPLG00000005272
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045956
161835125 - 161866209
31085
ENSAPLT00000005444
161837300 - 161870615
33316