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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161850266_161862644_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161850266 - 161862644
Intron Length:
12379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTGCAATAAAT
Flanking Amino Acid:
IFERDVSPGGESKMILKENV
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.8
0.85
0.7
82.7
25.9
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
52
0.14
2.1
79.82
41.4

Associated Gene:

Gene:
IL18RAP
Ensembl Gene ID:
ENSAPLG00000005272
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045956
161835125 - 161866209
31085
ENSAPLT00000005444
161837300 - 161870615
33316