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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161866167_161868410_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161866167 - 161868410
Intron Length:
2244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCAGAT
5'SS Class:
major
3'SS Sequence:
ATGCTTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCACTTTTGACT
Flanking Amino Acid:
GRDEEIETEIGKEEILNCTG
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
67.7
37.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
70.1
0.45
1
65.9
40.3
Minor 5ss
43.7
-0.7
3.3
64.3
47.2
Minor BPS
62
0.46
1.2
72.39
38.8

Associated Gene:

Gene:
IL18RAP
Ensembl Gene ID:
ENSAPLG00000005272
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005444
161837300 - 161870615
33316