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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161868474_161870437_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
161868474 - 161870437
Intron Length:
1964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GTTACTTCAATA
Flanking Amino Acid:
MVQDAPEAVTLEI
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
77.3
37.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
42.1
-0.9
2.9
59.1
45
Minor BPS
60
0.31
1.5
69.22
37.1

Associated Gene:

Gene:
IL18RAP
Ensembl Gene ID:
ENSAPLG00000005272
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005444
161837300 - 161870615
33316