Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_161900762_161901975_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

161900762 - 161901975

Intron Length:

1214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGGGTA

5'SS Class:

major

3'SS Sequence:

TTTTTATCCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTTTTATCC

Flanking Amino Acid:

ATVTLQLKAQCHP*

Intron Amino Acid Position:

319

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

75.2

34.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

81.6

0.71

0.7

77.7

Minor 5ss

35.2

-1.7

3.8

50.9

46.1

Minor BPS

65.6

0.47

1.5

74.42

36.4

Associated Gene:

Gene:

IL1RL1

Ensembl Gene ID:

ENSAPLG00000004919

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031548

161900429 - 161913020

12592